PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001875.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 290aa    MW: 33537.8 Da    PI: 7.2031
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001875.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM125.73.8e-39171291128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtd+elvv+yL++k++++++++  +i+++d+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkat
  Itr_sc001875.1_g00002.1  17 LPPGFRFHPTDDELVVHYLCRKCAAQSISV-PIIADIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKAT 101
                              79****************************.88***************7666789******************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+v +   ++ g+kk L            t+W+mheyrl
  Itr_sc001875.1_g00002.1 102 GADKPVGK--PKTLGIKKAL------------TNWIMHEYRL 129
                              ******88..6678999887............89******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-5213155IPR003441NAC domain
PROSITE profilePS5100542.10217155IPR003441NAC domain
PfamPF023657.2E-2218129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKGNGGIQDS KQSQLELPPG FRFHPTDDEL VVHYLCRKCA AQSISVPIIA DIDLYKFDPW  60
QLPEMALYGE KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPVGKP KTLGIKKALT  120
NWIMHEYRLA NVDRSAGKRN NLRLDEWVLC RIYNKKGSVE KYYVDEKEVN FPELEDEKPK  180
ITTPNILQNE AGLPPVITVN NQNGYLQLDR SESVPRRQTD SSCCSEQVQS PGDKEVQSAP  240
KWDDLNFQFN NFSDIALQTN FPFNEQHFNP FQQDMLFMHM HHHKSPFNFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-721216110174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071719.11e-118PREDICTED: NAC domain-containing protein 2
SwissprotQ390131e-104NAC2_ARATH; NAC domain-containing protein 2
TrEMBLC7ENF91e-136C7ENF9_IPOBA; NAC1
STRINGSolyc04g009440.2.11e-117(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12392481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-105NAC family protein